Once the pipeline is configured, you will need to import your desired files to the Input
folder
using the the following steps:
In the PipelineView, right click on the Input folder under the Data folder, then
select the
import (figure below). A pop-up menu appears which lets you select the files that
you
want to import.
Drop-downContext menu for importing the input files
Click on the small arrow next to the General folder to expand it, then select File
System
as the import source.
Click on the Next button
Import resources from the local file system into an existing
project
Next, as shown in figure below, click on the Browse button on the top of the window
to
choose the folder of your choice. The selected folder will be displayed on the left
side of
the window, and the files inside the folder will be displayed on the right side.
Import resources from the local file system into an existing
project
Click the checkbox for the files that you want to run the pipeline on; currently the
CLAMP-Cancer pipeline can only process files with the .txt extension. Also, CLAMP-Cancer assists
you
in selecting your desired files in three different ways: Filter Types, Select All
and Deselect
All.
Filter Types: Allows you to define the type of files that will be
imported. For example, you
may only want to import files with the .txt extension
Select All: Allows you to choose all displayed files Deselect All: Allow you to deselect the files that have already
been selected
Click on the Browse button next to the "Into folder" field to choose the folder that
you
want to import your files to. Here, we keep the default directory.
Click on the Finish button.
Now, you can double click on the Input folder to see the imported files
Imported files under the Input folder
Similarly, you can also double click on each file to view its content (figure below).
View the content of input file sample_1054.txt directly in the interface
